Low Latency-High Throughput: How Bare Metal GPUs Reconfigure the HPC and AI Convergence Arithmetic Base

Published December 19, 2025

When weather forecasting requires AI models to optimize the accuracy of numerical simulations, when biomedical R&D relies on HPC computing power to analyze molecular structures and uses AI to accelerate drug screenin...

When weather forecasting requires AI models to optimize the accuracy of numerical simulations, when biomedical R&D relies on HPC computing power to analyze molecular structures and uses AI to accelerate drug screening, and when autonomous driving simulations demand massive parallel data processing and real-time inference—the deep integration of HPC (High-Performance Computing) and AI has become the core driving force behind breakthroughs in cutting-edge technology.However, during this integration process, the dual demands of “low-latency data transmission” and “high-throughput computing power” have become insurmountable bottlenecks for traditional computing architectures. Bare-metal GPUs, leveraging their native hardware advantages and architectural-level optimizations, are emerging as the key solution to this dilemma, providing ultimate computing power support for HPC and AI integration scenarios.

I. Computing Power Bottlenecks Amid Convergence Demands: Why Are Traditional Architectures "Overwhelmed"?

The convergence of HPC and AI is, at its core, the collaborative operation of “massive parallel computing” and “precise model inference,” imposing dual stringent demands on computing architectures: On one hand, HPC scenarios such as fluid dynamics and quantum chemistry require sustained, stable high-throughput computing power to process terabytes (TB) or even petabytes (PB) of raw data;on the other hand, AI model training and inference require extremely low instruction latency to ensure efficient data transfer between CPUs, GPUs, and memory, thereby preventing slow model convergence or stuttering during inference caused by excessive latency.

Traditional virtualization or cloud server architectures reveal significant shortcomings in this scenario:

First, “performance overhead” at the virtualization layer: resource scheduling by the hypervisor causes a 10%–30% reduction in GPU computing power output, failing to meet HPC’s extreme throughput demands;

Second, "data transmission latency": data in virtualized environments must pass through multiple virtual links, resulting in transmission latency from memory to the GPU typically in the hundreds of microseconds—far from the microsecond-level requirements of real-time AI inference;

Third, "insufficient resource isolation": multi-tenant sharing of hardware resources causes fluctuations in computing power, affecting the stability of HPC results and the inference accuracy of AI models.

II. The Solution for Bare-Metal GPUs: A Dual-Path Approach to Low Latency and High Throughput

The core advantage of bare-metal GPU architecture lies in “native hardware direct access” and “exclusive resource allocation.” Through hardware-level optimization and architectural design, it simultaneously overcomes the dual challenges of low latency and high throughput, perfectly aligning with the convergence needs of HPC and AI. Its core implementation path can be summarized across three dimensions:

1. Hardware Direct Access: Breaking Through Virtualization Barriers to Achieve Microsecond-Level Latency

Bare-metal GPUs utilize "GPU passthrough technology" to directly mount GPU hardware resources onto the CPU bus of a physical server, completely bypassing the intermediate forwarding stages of the virtualization layer.This native mounting method compresses data transmission latency from the CPU cache and memory to GPU memory down to the microsecond range—for example, Yuanjie Computing’s bare-metal GPU nodes achieve memory-to-GPU transmission latency of less than 50 microseconds, representing a more than sixfold improvement over the 300+ microseconds typical of virtualized architectures.

Additionally, by leveraging PCIe 5.0 buses and NVLink high-speed interconnect technology, bare-metal GPU nodes enable point-to-point direct connections between GPUs, with single-link bandwidth reaching up to 600 GB/s. This further reduces data interaction latency during multi-GPU collaborative operations, providing efficient data transmission support for distributed AI training and HPC multi-node parallel computing.

2. Full Resource Exclusivity: Ensuring Stable High-Throughput Computing Power

Bare-metal GPUs provide users with "physical-server-level" resource exclusivity; hardware resources such as CPUs, GPUs, memory, and storage are not shared with other tenants, fundamentally eliminating resource contention and computing power fluctuations common in virtualized environments. Taking the NVIDIA H100 GPU bare-metal node deployed by Yuanjie Computing as an example, a single card delivers up to 716 TFLOPS of FP32 performance,and FP16 performance of up to 3,958 TFLOPS. Paired with 2TB of DDR5 5600MHz memory (offering bandwidth of up to 896GB/s) and four 4TB NVMe SSDs (with total read/write throughput exceeding 10GB/s), this configuration delivers sustained, stable high-throughput computing power, perfectly meeting the massive parallel processing demands of HPC scenarios.

Additionally, the bare-metal GPU supports custom operating systems and driver versions, allowing users to perform in-depth optimization configurations based on the requirements of HPC software (such as ANSYS and GROMACS) and AI frameworks (such as TensorFlow and PyTorch), further unlocking computational potential and enhancing overall throughput efficiency.

3. Elastic Architecture: Adapting to the Dynamic Computing Demands of Converged Scenarios

Computing power requirements in HPC and AI convergence scenarios are not static—for example, in drug screening, early-stage molecular structure analysis requires high-throughput HPC computing power, while later-stage model training and inference require flexible AI computing power scheduling. Bare-metal GPUs perfectly adapt to these dynamic demands through a "scalable + cluster interconnect" architecture.
The Yuanjie Computing Bare-Metal GPU platform supports on-demand deployment of single nodes and cluster-based scaling across multiple nodes. Within the cluster, nodes are interconnected via 200G/400G RDMA high-speed network cards, achieving data transmission latency as low as 1 microsecond between nodes. The platform can rapidly scale up or down according to the computing demands of hybrid scenarios, ensuring peak computing capacity while avoiding idle resource waste, thereby achieving efficient utilization of computing resources.

III. Practical Validation: The Practical Value of Bare-Metal GPUs in Converged Scenarios

In a drug R&D project at a biopharmaceutical company, a Yuangjie Computing bare-metal GPU cluster (equipped with 8 NVIDIA H100 GPUs) was deployed to build an HPC+AI converged computing platform: On one hand, HPC computing power was used to perform parallel analysis of massive molecular structures, with single-task processing efficiency improved by 40% compared to traditional virtualized architectures;On the other hand, AI models were used to screen and optimize the analysis results. Thanks to microsecond-level latency transmission, model training convergence speed increased by 35%. Ultimately, the drug screening cycle was shortened from 6 months to 2 months, significantly improving R&D efficiency.
In weather forecasting scenarios, bare-metal GPU clusters use HPC computing power to perform real-time analysis of global meteorological data while leveraging AI models to optimize prediction accuracy. High-throughput computing ensures rapid processing of terabyte-scale meteorological data, and low-latency transmission ensures timely AI model responses to real-time data, improving short-term weather forecast accuracy by 15% and reducing forecast response times to minutes.

IV. Conclusion: Bare-Metal GPUs—The Core Computing Foundation for HPC and AI Convergence

The convergence of HPC and AI represents an upgrade in computing power requirements from a “single-dimensional” approach to “multi-dimensional collaboration,” with low latency and high throughput serving as the core prerequisites for this evolution. Leveraging three key advantages—hardware direct access, full resource exclusivity, and an elastic architecture—bare-metal GPUs have overcome the performance loss and latency challenges of traditional architectures while ensuring the stable output of high-throughput computing power, establishing themselves as the optimal computing architecture for HPC-AI convergence.
Yuanjie Computing specializes in the bare-metal GPU sector. Through customized hardware configurations, deeply optimized software stacks, and a flexible, scalable service system, we provide unparalleled computing power support for HPC+AI integration scenarios across various industries. Whether in biopharmaceuticals, weather forecasting, autonomous driving, or industrial simulation, Yuanjie Computing precisely matches scenario requirements to help enterprises overcome computing bottlenecks and accelerate technological innovation and business implementation.


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